MmuEX6029822 @ mm10
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:182607594-182613537:+
Coord C1 exon
chr1:182607594-182607769
Coord A exon
chr1:182611089-182611100
Coord C2 exon
chr1:182613326-182613537
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTGCCATGCAGATT
3' ss Score
9.59
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
CCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGTCAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAG
Seq A exon
ATTCCCAAGGAG
Seq C2 exon
CTGGAGAATCACACCGATGAGCACCTGGGCCGGGATTTCTTCCAGGGCCGCCAGCCCTCCACCTGCTCCAGCACCTACATGAACCTTCGAGAGGTGTCCAGCAGGGTCCAACTCCCCCCAGGACAGTACCTGGTGGTGCCATCCACCTTTGAGCCCTTCAAGGACGGTGACTTCTGCCTGAGGGTGTTCTCGGAGAAGAAGGCCCAGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(36.7=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAATCGCAGACGTCA
R:
CAGGTGCTCATCGGTGTGATT
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types