DreEX0018851 @ danRer10
Exon Skipping
Gene
ENSDARG00000055715 | capn8
Description
calpain 8 [Source:ZFIN;Acc:ZDB-GENE-050522-279]
Coordinates
chr22:26404274-26407153:+
Coord C1 exon
chr22:26404274-26404443
Coord A exon
chr22:26404545-26404556
Coord C2 exon
chr22:26406942-26407153
Length
12 bp
Sequences
Splice sites
3' ss Seq
AATGTTTTTGTGTTTTTCAGGTT
3' ss Score
12.5
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
CGACGTTCTGCTCAAACCCTCAGTTTATGATCAAGCTGGAGGAAATAGACGATGATCCTCATGATGGAGTGAATGGGTGCACATTCCTGGTGGGTTTGATGCAGAAAGATGGTCGTAAAGACAAGCGCTTTGGACGAGACCTAAATACCATCGGATTTGCCATCTATAAG
Seq A exon
GTTCCGGATGAG
Seq C2 exon
TTAAAGGGTCGCAGCAATATTCATCTGGGCCCTGATGTCCTGCTGCGTCAACGTTCGGTTGCTGGGAGCAACACCTTCATCAACCTGCGAGAGGTGAGCGAGCGCTTTAAATTGCCTCCTGGCGAATACATCATCGTCCCCTCCACCTTTGAACCGCACCGGAAAGGAAGTTTCATTCTGCGGGTGTTCGCAGAAAAAGAAGCTGATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055715-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(38.5=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTTGGACGAGACCTAAA
R:
GTTGACGCAGCAGGACATCAG
Band lengths:
98-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]