BtaEX6067964 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27822469-27825789:+
Coord C1 exon
chr16:27822469-27822638
Coord A exon
chr16:27824380-27824391
Coord C2 exon
chr16:27825578-27825789
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCCTTTATTTGCAGGTT
3' ss Score
10.26
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACACGTTCTGGATGAATCCTCAGTACCTGATCAAGCTGGAGGAAGAGGACGAGGACCAGGAGGACGGGGAGAGCGGCTGCACCTTCCTGGTGGGCCTCATCCAGAAGCACCGGCGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
Seq A exon
GTTCCAGAGGAG
Seq C2 exon
TTGACTGGACAGACCAACATCCACCTCAGCAAAAAATTCTTCCTGACAACCAGAGCGCGGGAGCGGTCGGACACCTTCATCAACCTGCGGGAGGTGCTCAACCGCTTCAAGCTGCCCCCCGGGGAGTACATCGTGGTGCCCTCCACCTTCGAGCCCAACAAGGACGGCGACTTCTGCATCCGGGTCTTTTCCGAGAAGAAAGCCGACTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778-'11-11,'11-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(35.9=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGGCTTCGGCATCTATGA
R:
GGTTGATGAAGGTGTCCGACC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]