DreEX0018824 @ danRer10
Exon Skipping
Gene
ENSDARG00000034211 | capn2l
Description
calpain 2, (m/II) large subunit, like [Source:ZFIN;Acc:ZDB-GENE-050417-341]
Coordinates
chr22:26637506-26639494:+
Coord C1 exon
chr22:26637506-26637684
Coord A exon
chr22:26637802-26637813
Coord C2 exon
chr22:26639280-26639494
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATATTATATGTTGTCCACAGGTT
3' ss Score
10.28
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACTCGTTCTGGATGAATCCTCAGTTTTTGATCAAGCTGGAGGAGCAGGACGATGACCCGACTGATAATGAAGCAGGATGCAGCTTCGTTGTCGGATTGATCCAGAAGAACCGCCGCAAAATGAGGAAGGTCGGAGAGGACATGAACACCATCGGCTTCGCAATCTATGAGGTGAGCAGC
Seq A exon
GTTCCTGACGAG
Seq C2 exon
CAGTTTGTGGGACAGAGGAACGTTCACCTGGATCGTAACTTCTTTGTGCGACATGCTTCAGCTGCTCGCTCCGAGACCTTCATCAACCTGCGGGAGGTTTGCTCTCGCTTCTGTCTGCCGCCCGGCGAGTACCTCATCGTACCCTCCACCTTTGAGCCCAACAAAGATGGCGACTTCTGTGTGCGCGTTTTCTCCGAAAAACAAGCAGAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034211-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(35.9=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(45.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGAACACCATCGGCTT
R:
GCTGAAGCATGTCGCACAAAG
Band lengths:
105-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]