RnoEX0016700 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100893425-100896308:-
Coord C1 exon
chr13:100896139-100896308
Coord A exon
chr13:100894508-100894519
Coord C2 exon
chr13:100893425-100893636
Length
12 bp
Sequences
Splice sites
3' ss Seq
AGTCCTCCTTTATTTTTCAGGTC
3' ss Score
11.63
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATACCTTCTGGATGAACCCTCAGTACCTAATCAAGCTGGAGGAAGAAGATGAAGATGATGAGGATGGGGAGAGGGGCTGTACCTTCCTGGTGGGCCTCATCCAGAAGCATCGGCGGCGGCAGAGGAAGATGGGTGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
Seq A exon
GTCCCAGAGGAG
Seq C2 exon
CTAACAGGGCAGACCAACATCCACCTCAGCAAAAACTTTTTCCTGACAACCCGAGCCAGGGAGCGGTCAGATACCTTCATCAACCTCCGGGAGGTCCTCAACCGCTTCAAGCTGCCCCCGGGAGAATATGTCCTTGTTCCTTCCACCTTCGAGCCCCACAAGAATGGCGATTTCTGCATCCGAGTCTTCTCAGAGAAGAAGGCTGACTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'17-19,'17-18,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(35.9=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGGACATGCACACCATT
R:
GGCTCGGGTTGTCAGGAAAAA
Band lengths:
96-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]