HsaEX1006947 @ hg38
Exon Skipping
Gene
ENSG00000162909 | CAPN2
Description
calpain 2 [Source:HGNC Symbol;Acc:HGNC:1479]
Coordinates
chr1:223755480-223759481:+
Coord C1 exon
chr1:223755480-223755649
Coord A exon
chr1:223757369-223757380
Coord C2 exon
chr1:223759270-223759481
Length
12 bp
Sequences
Splice sites
3' ss Seq
GCATCTCCTTTATTTTGCAGGTT
3' ss Score
10.19
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACACATTCTGGATGAACCCTCAGTACCTGATCAAGCTGGAGGAGGAGGATGAGGACGAGGAGGATGGGGAGAGCGGCTGCACCTTCCTGGTGGGGCTCATTCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTTGGCATCTATGAG
Seq A exon
GTTCCAGAGGAG
Seq C2 exon
TTAAGTGGGCAGACCAACATCCACCTCAGCAAAAACTTCTTCCTGACGAATCGCGCCAGGGAGCGCTCAGACACCTTCATCAACCTCCGGGAGGTGCTCAACCGCTTCAAGCTGCCGCCAGGAGAGTACATTCTCGTGCCTTCCACCTTCGAACCCAACAAGGATGGGGATTTCTGCATCCGGGTCTTTTCTGAAAAGAAAGCTGACTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162909-'38-49,'38-44,40-49
Average complexity
S
Mappability confidence:
100%=80=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(35.9=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.9=100)
Main Skipping Isoform:
ENST00000295006fB11299
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATCGGCTTTGGCATCTA
R:
TTGATGAAGGTGTCTGAGCGC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains