MmuEX6029809 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182481447-182484372:-
Coord C1 exon
chr1:182484203-182484372
Coord A exon
chr1:182482536-182482547
Coord C2 exon
chr1:182481447-182481658
Length
12 bp
Sequences
Splice sites
3' ss Seq
AGGCCTCCTTTGTTTTTCAGGTT
3' ss Score
10.24
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATACCTTCTGGATGAACCCTCAGTACCTAATTAAGCTGGAGGAAGAAGACGAAGATGAGGAGGATGGGGAGAGAGGCTGTACCTTCCTGGTGGGTCTCATCCAGAAGCACCGGCGACGGCAGAGGAAGATGGGCGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
Seq A exon
GTTCCAGAGGAG
Seq C2 exon
CTAACAGGGCAGACCAACATCCACCTCGGCAAAAACTTTTTCCTCACAACCCGAGCCAGGGAGCGGTCAGATACCTTCATTAACCTCCGCGAGGTCCTCAACCGCTTCAAGCTGCCCCCGGGAGAGTATGTCCTCGTTCCCTCCACCTTCGAACCCCACAAGGATGGCGATTTCTGCATCCGAGTCTTCTCGGAGAAGAAGGCTGACTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'19-21,'19-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(35.9=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.9=100)
Main Skipping Isoform:
ENSMUST00000068505fB6987
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGATGGGCGAGGACAT
R:
GGCTCGGGTTGTGAGGAAAAA
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types