MmuEX6034717 @ mm9
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15902115-15906166:-
Coord C1 exon
chr8:15906005-15906166
Coord A exon
chr8:15903166-15903278
Coord C2 exon
chr8:15902115-15902202
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCACTGTAACATTTTTTCAGGGG
3' ss Score
7.49
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTCCTTCTGATGTATTTTTCATCAACTCGGTGTGGAAAGGATATTATGAATATTTAGGAAAGAGACAGCCGGCGACTCTCACTGTGGACTGGTTCAATGCGACCAGCAGCAAGGTCAATGCGACCTTCACTGCGGCCTCACGGGTGCAGCTGGAGCTGACCG
Seq A exon
GGGTCTACAAGAAGGAAGAGGCCCACCTGCTTCTGAAAGCCTTTCATATCAAAGGCCCAGCAGATATTTTTGTAAGCAAGTTTGAAAATGACAACTGGGGACTCGATGGTTAC
Seq C2 exon
GTGTCCTCAGGACTTGAGAGGGGAGGATTCTCCTTTCAGGGTGATATACATGGAAAAGATTTTGGGAAGTTCAAGCTGGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'78-83,'78-82,79-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGTATTTTTCATCAACTCGGT
R:
GTCTTTCCAGCTTGAACTTCCCA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: