RnoEX6056049 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78835648-78839479:+
Coord C1 exon
chr16:78835648-78835809
Coord A exon
chr16:78838533-78838645
Coord C2 exon
chr16:78839392-78839479
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACTGTAACATTTTTTCCAGGGG
3' ss Score
6.25
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TTCCTTCTGATGTATTTTTCATCAACTCGGTGTGGAAGGGATATTATGAATATTTAGGCAAGAGACAGCCGGCGACTCTCACTGTGGACTGGTTTAATGCAACCAGCAGCAAGGTCAATGCGACCTTCACCGCAGCCTCACAGGTGCAGCTGGAGCTGACAG
Seq A exon
GGGTCTACAAGAAGGAAGAGGCCCACCTGCTTCTGAAAGCCTTTCATATCAAAGGCCCAGCAGATATTTTTGTAAGCAAGTTTGAAAATGACAACTGGGGACTCGATGGTTAT
Seq C2 exon
GTATCCTCAGGACTTGAGAGAGGAGGATTCTCCTTTCAGGGTGATATACATGGAAAAGACTTCGGGAAGTTCAAGCTGGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'62-64,'62-63,63-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGTATTTTTCATCAACTCGGT
R:
TGTCTTTCCAGCTTGAACTTCCC
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]