GgaEX7003318 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFS4]
Coordinates
chr3:89754969-89758074:+
Coord C1 exon
chr3:89754969-89755030
Coord A exon
chr3:89756948-89757060
Coord C2 exon
chr3:89757987-89758074
Length
113 bp
Sequences
Splice sites
3' ss Seq
TACCTCCTTTACATTAATAGGTG
3' ss Score
7.63
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TACAAGCAGCAAAGTGAATGCCACATTCACTGAAGCATCCAGCCTACAACTCAAACTGTCAG
Seq A exon
GTGTTTACAAGAAGGAAGAAGCCCATTTGCTACTGAAAATTTTTCAGATCAAAGGATCTAATGACATTTTCACAAACAAGTTTGAAAATGACAACTGGGCACTAGATGGTTAT
Seq C2 exon
GTGTCATCGGGGCTTGAAAGAGGTGTTTTTACTTATCAAGGTGACATACATGGAAAAGACTTTGGAAAATTTATGCTACAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027412-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAGCAAAGTGAATGCC
R:
AGCATAAATTTTCCAAAGTCTTTTCC
Band lengths:
138-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]