BtaEX6106364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1029280-1033231:-
Coord C1 exon
chr27:1033073-1033231
Coord A exon
chr27:1030112-1030224
Coord C2 exon
chr27:1029280-1029367
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACCCATGCTCCTTTCCTAGGTG
3' ss Score
9.33
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTCCTTCAGATGTGTTTTTCATCCATTCGGTGTGGAAGGGATATTACGAATATTTAGGGAAAAGACAGCCTGCGACCCTAACTGTCGATTGGTTCAATGCAACTAGCAGCAAAGTGAATGCGACGTTCACTGACTCCCAAGGGGAGCTGAAGTTGACAG
Seq A exon
GTGTTTACAAGAAGGAGGAGGCCCACTTACTTCTGAAAGCTTTTCAGATAAAAGGTCCAGTGGATATTTTCGTCAGCAACTTTGAGAATGACAACTGGGGACTGGATGGTTAT
Seq C2 exon
GTATCATCCGGACTTGAAAGAGGAGGGTTTACTTTTCAAGGTGACATACATGGAAAAGACTTTGGGAAATTCAAGCTGGAAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'66-67,'66-66,67-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCAGATGTGTTTTTCATCCA
R:
GCCTTTCCAGCTTGAATTTCCC
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]