DreEX6073836 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36539410-36544539:-
Coord C1 exon
chr19:36544378-36544539
Coord A exon
chr19:36543506-36543618
Coord C2 exon
chr19:36539410-36539497
Length
113 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTCTATTCCTTCAGGTA
3' ss Score
10.69
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TGCCAAGTGGGGTTTTTGCGAAGAACTCTCTCTGGAGGGGTTCATACGAATATCTAGGGAAGAAGCAGCCAGCAATGCTTAGCATAACTGCGTTTGAAGCGTTCAGCAATCGGGTCAATGGCACTCTCATGGACCACAGCGGAGTTCAGCTCAATCTGGCTG
Seq A exon
GTATCTTTAAGAAAGAAGAAGCCCAGTTGCTGCTGCAGGTGTATCAGATTCGTGGCCCTGTGGAGATCTTCGTTAACAAGTTCAAAATTGACAACTGGGCACTTGATGGACAT
Seq C2 exon
GTGTCATACATGCCTTCATCTGATTCATTCGTATACCAGGGCTTTGTTCGAGGAAAGGGTTTTGGCCAGTTTGGACTTCAGAGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'78-79,'78-78,79-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGGGTTTTTGCGAAG
R:
CCTCTGAAGTCCAAACTGGCC
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]