RnoEX6023400 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146732594-146736978:+
Coord C1 exon
chr5:146732594-146732755
Coord A exon
chr5:146734750-146734862
Coord C2 exon
chr5:146736891-146736978
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACCTACTTTCTTTCTCTAGGAA
3' ss Score
11.38
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTCCAGGGGATGTCTTTGCCAAGAATTCCTTGTGGAAAGGGGCCTATGAGTACCAGGGGAAGAAGCAGCCAGCCATGCTTAGAGTCATCAGCTTCCAGGTAGCCAACAGCAAGGTCAACGCCACCATGATCGACCACAGTGGGGTGGAACTGCACTTGGCAG
Seq A exon
GAAATTATAAAAAGGAAGATTTCCGCCTCCTGCTTCAGGCTTACCAGGTCACGGGTCCGGCGGAGAGCTTCGTGAACAAGTTCAAAGACGACCACTGGGCATTAGATGGCCAC
Seq C2 exon
GTCTCCTCAGAGTCCTCTGGAGGCACATTCGTCTACCAAGGGTCCGTCAAGGGCCAAGGCTTCGGGCAGTTCGGCTTTCAAAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'78-89,'78-88,79-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGGATGTCTTTGCCAAG
R:
TCTTTGAAAGCCGAACTGCCC
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]