GgaEX1017854 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5167937-5169526:+
Coord C1 exon
chr23:5167937-5168098
Coord A exon
chr23:5168623-5168735
Coord C2 exon
chr23:5169439-5169526
Length
113 bp
Sequences
Splice sites
3' ss Seq
AAAAGTCACTTATTTTCCAGGCA
3' ss Score
5.64
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGCCTGCTGATGTGTTTGCTAGAAATTCCCTTTGGAAAGGCTCCTACGAATACATGGGAAAAAAGCAGCCTGCAATGCTGTCTGTCACCAGCTTCGACCCCGTCACCAGTAAAGTCAATGCCACTTTGATAGACCACAGCGGCGTGGAGCTCCAGGTTTCTG
Seq A exon
GCATTTACAAGAAAGAAGACGTGCACCTGCTCCTCCAGGTCTATCAGATTATGGGGCCAGTGGAGATCTTTGTAAACAAGTTCAAAAACGATAAATGGGCTCTAGATGGACAT
Seq C2 exon
GTCTCATCAGAGTCGTCCAGTGGCACGTTTGTGTACCAGGGCTTTGTGCGTGGCAAAGGGTTCGGGCAGTTTGGTCTTCAGAGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'78-81,'78-80,79-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCTGATGTGTTTGCTA
R:
TGAAGACCAAACTGCCCGAAC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]