BtaEX0010212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112892045-112896559:+
Coord C1 exon
chr3:112892045-112892206
Coord A exon
chr3:112894015-112894127
Coord C2 exon
chr3:112896472-112896559
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTGCACTTTCTTTTCCCAGGAA
3' ss Score
9.8
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTCCTGGGGATGTTTTTGCCAAGAATTCCCTATGGAAAGGGGCCTATGAGTACCAGGGGAAGAAGCAGCCAGCCATGCTCAGGGTGACTGGCTTCCAGGTCATCAACAGCAAGGTCAACGCCACCATGGTTGACCACAGCGGCGTGGAGCTGCACTTGTCTG
Seq A exon
GAATTTATAAGAAAGAAGATTTCCATCTCCTCCTTCAAGTTTACCAGATTACAGGGCCTGTGGAGATCTTTGTGAATAAGTTCAAAGATGATCACTGGGCTTTAGATGGGCAT
Seq C2 exon
GTCTCCTCGGAGTCCTCTGGAGGCACCTTCGTCTACCAAGGCTCTGTCAAGGGCCAAGGCTTCGGGCAGTTCGGCTTTCAAAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'86-82,'86-81,87-82
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGGATGTTTTTGCCAA
R:
TCTTTGAAAGCCGAACTGCCC
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development