MmuEX6096179 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128530678-128564224:+
Coord C1 exon
chr4:128530678-128530747
Coord A exon
chr4:128559860-128559972
Coord C2 exon
chr4:128564009-128564224
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACCTACTTTCTTTCTCTAGGAA
3' ss Score
11.38
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TCATCAACTGTACGGATCCCGGGCACCAGGAGAACAGTGTCCGGCAAGTCCACACCAGCGGGCCCCACAG
Seq A exon
GAAACTATAAAAAGGAAGATTTCCGCCTCCTGCTTCAAGTCTACCAGGTCACGGGGCCTGTGGAGAGCTTTGTGAATAAGTTCAAAGATGACCACTGGGCGTTAGATGGCCAT
Seq C2 exon
GAGAAGACCCAAAGTCCCATTCAATGGCTATGCTGGCCACGAGAACACAAACGTGCGGGCCACATTTGAGAACCCCATGTATGACCGCAACATCCAGCCCACAGACATCATGAGCAACGAGGCGGAGTTCACAGTCAGCACGGTGTGTACTGCGGTATAGCCCCCAGGCCTGGCTGCAGCTGCCACCGCCACCGAGTGCCCCGCCGCCAGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804_MULTIEX2-12/15=C1-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000184063fB8287
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCAGGAGAACAGTGTC
R:
GCTATACCGCAGTACACACCG
Band lengths:
210-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types