MmuEX6096179 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128234869-128239122:+
Coord C1 exon
chr4:128234869-128235030
Coord A exon
chr4:128237104-128237216
Coord C2 exon
chr4:128239035-128239122
Length
113 bp
Sequences
Splice sites
3' ss Seq
AACCTACTTTCTTTCTCTAGGAA
3' ss Score
11.38
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTCCAGGGGATGTTTTTGCCAAGAACTCCTTGTGGAAAGGGGCCTATGAATACCAGGGGAAGAAGCAGCCAGCCATGCTTAGAGTCACCGGCTTCCAGGTAGCCAACAGCAAGGTCAACGCCACCATGATCGACCACAGTGGGGTGGAACTGCATTTGGCAG
Seq A exon
GAAACTATAAAAAGGAAGATTTCCGCCTCCTGCTTCAAGTCTACCAGGTCACGGGGCCTGTGGAGAGCTTTGTGAATAAGTTCAAAGATGACCACTGGGCGTTAGATGGCCAT
Seq C2 exon
GTTTCCTCGGAGTCTTCTGGAGGCACCTTCGTCTACCAAGGCTCCGTCAAGGGCCAAGGCTTTGGGCAGTTCGGCTTTCAAAGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'76-74,'76-73,77-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGGGATGTTTTTGCCAA
R:
TTGAAAGCCGAACTGCCCAAA
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: