MmuEX6039468 @ mm9
Exon Skipping
Gene
ENSMUSG00000025809 | Itgb1
Description
integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
Coordinates
chr8:131248096-131250957:+
Coord C1 exon
chr8:131248096-131248328
Coord A exon
chr8:131249920-131250086
Coord C2 exon
chr8:131250883-131250957
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTAACCTTTTCATTTGTAGACT
3' ss Score
9.19
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AGAATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAAGACACGTGTGCACAGGAGTGCTCCCACTTCAATCTCACCAAAGTAGAAAGCAGGGAGAAGTTGCCCCAGCCGGTGCAGGTCGATCCTGTGACCCATTGCAAGGAGAAGGACATTGATGACTGCTGGTTCTATTTCACCTATTCAGTGAATGGCAACAATGAAGCTATCGTGCATGTTGTGGAGACTCCAG
Seq A exon
ACTGTCCTACTGGTCCCGACATCATCCCAATTGTAGCAGGCGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCCTTGCTGCTGATTTGGAAACTTTTAATGATAATTCATGACAGAAGGGAATTTGCTAAATTTGAAAAGGAGAAAATGAATGCCAAGTGGGACACG
Seq C2 exon
CAAGAAAATCCGATTTACAAGAGTCCTATTAATAATTTCAAGAATCCAAACTATGGACGTAAAGCTGGTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025809-'20-19,'20-18,21-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(15.4=10.7),PF147521=RBP_receptor=FE(63.2=100),PF111883=DUF2975=PD(74.6=94.6),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF147521=RBP_receptor=PD(14.9=50.0),PF087256=Integrin_b_cyt=PD(44.7=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCACTTCAATCTCACCA
R:
TCAGAGACCAGCTTTACGTCCA
Band lengths:
246-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: