BtaEX6063982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015910 | ITGB1
Description
Bos taurus integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174368]
Coordinates
chr13:20282401-20292114:+
Coord C1 exon
chr13:20282401-20282633
Coord A exon
chr13:20284996-20285162
Coord C2 exon
chr13:20290917-20292114
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTTTCACTTTACAGAGT
3' ss Score
10.45
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AGAATGTGTTCAGTGCCGAGCCTTCAATAAAGGAGAGAAGAAAGACACATGTGCTCAGGAATGTTCACATTTCAACATTACCAAGGTTGAAAATCGGGACAAATTGCCCCAGCCAGGCCAGGTGGATCCCTTGTCCCACTGTAAGGAGAAGGACGTTGACGACTGCTGGTTCTACTTCACATACTCCGTGAATGGGAACAATGAGGCCACTGTTCATGTTGTAGAGACTCCAG
Seq A exon
AGTGCCCCACTGGTCCAGACATTATTCCAATTGTAGCAGGTGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCATTGCTGCTGATTTGGAAGCTTTTAATGATCATTCATGACAGAAGGGAATTTGCCAAATTTGAGAAGGAAAAAATGAATGCCAAATGGGACACG
Seq C2 exon
GGTGAAAATCCTATTTACAAGAGTGCTGTGACAACTGTTGTTAATCCGAAGTACGAGGGGAAATGAGCACTGCCTGTGTGTACCCACAGCACTGCAGGCAAAGTAGTAATTCCACAGTCACAGTAAGAGAGCTTCAGGGCAGTGTCACCATGGTTCTCTCATGGGCAGGTTCTGAAAATGTACAATATGTATAATTTGAAATTTTTTTTATTATTTTGAAAATAATGTTATAACCAATGCCAGGGACTGACAAAAGACTTGAGACAGGATGGTTATCCTTGTCATCTAAGGTCACAATGTGCCTTTTTGACCTTTTCTCCTGGACTAGTGAAATCCAGCTCTTACTGGATTAAGCAGTATTTCTAGAGTGATTGAAAGGCAGTAGTTAACGAGGATGATATAAGATTTTCTGTTAAGTGTTAAACTGATTTCTAGCTTTGCAGACATGTCATTTTTCAGTTATACAGAATCCAAAGTAATGTCCTTCTAGCTAGTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015910-'37-34,'37-30,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(6.7=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGGACGTTGACGACT
R:
GCCCATGAGAGAACCATGGTG
Band lengths:
256-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]