GgaEX1030745 @ galGal4
Exon Skipping
Gene
ENSGALG00000007145 | ITGB1
Description
integrin beta-1 precursor [Source:RefSeq peptide;Acc:NP_001034343]
Coordinates
chr2:14007363-14017232:+
Coord C1 exon
chr2:14007363-14007595
Coord A exon
chr2:14009298-14009464
Coord C2 exon
chr2:14016012-14017232
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTTCTGTACCCTAGAAT
3' ss Score
9.09
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGACTGTGTTCAGTGCAGAGCTTTTGAGAAGGGAGAAAAAAAGGAAACGTGTTCTCAGGAATGCATGCATTTTAACATGACACGGGTAGAAAGTCGAGACAAATTGCCACAGCCCGGCCAGCCCGATCCGCTGTCTCACTGCAAAGAAAAGGACGTTGATGACTGCTGGTTCTACTTCACATACTCTGTCAATTCCAATGGTGAAGCCAGTGTCCATGTGGTAGAGACTCCAG
Seq A exon
AATGCCCTAGTGGCCCTGACATCATACCCATTGTAGCTGGCGTGGTTGCTGGAATTGTTCTTATTGGACTTGCATTGTTATTGATTTGGAAACTACTGATGATCATTCATGACAGGAGAGAATTTGCTAAATTTGAAAAGGAGAAGATGAATGCCAAGTGGGATACG
Seq C2 exon
GGTGAAAATCCTATTTACAAGAGTGCAGTGACAACTGTGGTCAATCCTAAATATGAGGGAAAATGAACACTGCTTGTGTAACTTCACGACACTGTATGCAGCGTAGCAATTTTTGTAGTCACAGTAAGATAGATTTAGGGCAAACTGCAGTGATTTTACTAATTCATTACATATAGGTTTGTTTTCCTGTTCAGGTTTTGAGAATGTACCATATGTAATTTTTTTTTTTATGTTTATTTTTAATTTCTTTTGCAAATAAAAATCAGTGCCAGGGGTCTGACAAAAAAAAAACCAACAAAAACTTGAGACTGTGTAGCTTAGTCAGCTGAGGTCACATGGTGCCTTTTTGACCTTTTCCACTCCCGTGCTGTGAATCTACATCTTCTACAGGGTGTGATAGTGCTTTGACAAGACTGGGAGGGAACTGGTTAAAGCATGAGGGCTCTGCCTAGCCATTTAGCGTTACAATTTGTAGCTTTACAGGGAAATCAGGGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'26-43,'26-31,28-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(6.7=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGACAAATTGCCACAGCC
R:
GCTGCATACAGTGTCGTGAAGT
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]