GgaEX1030745 @ galGal3
Exon Skipping
Gene
ENSGALG00000007145 | F1N8N7_CHICK
Description
NA
Coordinates
chr2:13991611-14001480:+
Coord C1 exon
chr2:13991611-13991843
Coord A exon
chr2:13993546-13993712
Coord C2 exon
chr2:14000260-14001480
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTTCTGTACCCTAGAAT
3' ss Score
9.09
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGACTGTGTTCAGTGCAGAGCTTTTGAGAAGGGAGAAAAAAAGGAAACGTGTTCTCAGGAATGCATGCATTTTAACATGACACGGGTAGAAAGTCGAGACAAATTGCCACAGCCCGGCCAGCCCGATCCGCTGTCTCACTGCAAAGAAAAGGACGTTGATGACTGCTGGTTCTACTTCACATACTCTGTCAATTCCAATGGTGAAGCCAGTGTCCATGTGGTAGAGACTCCAG
Seq A exon
AATGCCCTAGTGGCCCTGACATCATACCCATTGTAGCTGGCGTGGTTGCTGGAATTGTTCTTATTGGACTTGCATTGTTATTGATTTGGAAACTACTGATGATCATTCATGACAGGAGAGAATTTGCTAAATTTGAAAAGGAGAAGATGAATGCCAAGTGGGATACG
Seq C2 exon
GGTGAAAATCCTATTTACAAGAGTGCAGTGACAACTGTGGTCAATCCTAAATATGAGGGAAAATGAACACTGCTTGTGTAACTTCACGACACTGTATGCAGCGTAGCAATTTTTGTAGTCACAGTAAGATAGATTTAGGGCAAACTGCAGTGATTTTACTAATTCATTACATATAGGTTTGTTTTCCTGTTCAGGTTTTGAGAATGTACCATATGTAATTTTTTTTTTTATGTTTATTTTTAATTTCTTTTGCAAATAAAAATCAGTGCCAGGGGTCTGACAAAAAAAAAACCAACAAAAACTTGAGACTGTGTAGCTTAGTCAGCTGAGGTCACATGGTGCCTTTTTGACCTTTTCCACTCCCGTGCTGTGAATCTACATCTTCTACAGGGTGTGATAGTGCTTTGACAAGACTGGGAGGGAACTGGTTAAAGCATGAGGGCTCTGCCTAGCCATTTAGCGTTACAATTTGTAGCTTTACAGGGAAATCAGGGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'16-25,'16-20,18-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(6.7=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGACAAATTGCCACAGCC
R:
GCTGCATACAGTGTCGTGAAGT
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]