DreEX6093683 @ danRer10
Exon Skipping
Gene
ENSDARG00000071863 | itgb1a
Description
integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]
Coordinates
chr24:1116468-1124734:-
Coord C1 exon
chr24:1124502-1124734
Coord A exon
chr24:1122939-1123105
Coord C2 exon
chr24:1116468-1117307
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTGATTGTCCAGAGT
3' ss Score
6.21
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
Exon sequences
Seq C1 exon
GGAGTGTGTTCAGTGTCGTGCGTTCGGCACCGGAGAGAAGAAGGACACCTGTAAGCGCGACTGCAGCTACTTCAACCTGATCGAGGTGGAGGATCGAGACAAACTCCCGCAGCCGGTGCAGGCCTTTCCACTAATGCACTGCAAGGAGAGAGATGCGCGAGACTGCTGGTTCTACTACACATACGCCGTCAACAACAACACAGAGAAGGAGGTGCACGTCGTCAAGACCATGG
Seq A exon
AGTGTCCGCCGGGTCCAGATATCATCCCCATCGTGGCCGGTGTAGTGGCAGGAATCGTGCTGATCGGTCTCGCTCTGCTGCTCATCTGGAAGCTGCTCATGATCATCCACGACCGACGTGAATTCGCCAAATTCGAGAAGGAGAAGATGAACGCCAAGTGGGACACG
Seq C2 exon
GGAGAAAACCCCATCTACAAGAGCGCCGTCACAACTGTGATCAACCCCAAATACGAAGGCAAATAATGGCCATCAGAATCACTCACCAGGATGTTTGGCAAGGGATGGGTGTGCGGATTTCCTCCCTATTTCTTTATTTTCTCATTCGTTTAGATCAATACTAGGAAGTTGTATTTCATGTCCGCCTCTCATCCCTTGCAAACCTGTACAGTCTGTATAGTCTTTTAACTTTCATTGGTTTTCCTTCTTTTACACCCTGTGCACATTCACGCAATCTCTCAATTCAGAACCGACAGATATCTGTGCCTTTGCATAAAGCTTTATATAAAAGGGATCCTTAAAAATCCAGACTTAGTGGAAATACAGGCCTACAGTATTGAAAAACATGCAATGCATTGCTCCAGGTACGTTTCGTTGTACGTTTCAGATGACAAATCCACTAGAGGGCGGAAGATTTTTGGAAATTTACATAAGTTAAGGCCACAGTGCAGTTAATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071863-'15-19,'15-17,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(6.7=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGAGACAAACTCCCGCAG
R:
ACCCATCCCTTGCCAAACATC
Band lengths:
252-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]