RnoEX0045180 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61716727-61725535:+
Coord C1 exon
chr19:61716727-61716959
Coord A exon
chr19:61718265-61718431
Coord C2 exon
chr19:61724379-61725535
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTAACCTTTTCGTTTGTAGACT
3' ss Score
9.22
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AGAATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAAAAAGACACGTGTGCACAGGAGTGCTCCCATTTCAACCTCACTAAAGTGGAAAGCAGGGAGAAGTTGCCCCAGCCTGTGCAGGTGGACCCTGTGACCCACTGCAAGGAGAAGGACATTGATGACTGCTGGTTCTATTTCACCTACTCAGTGAACAGCAACGGTGAAGCTCACGTGCATGTTGTGGAGACTCCAG
Seq A exon
ACTGTCCTACTGGTCCCGACATCATCCCAATTGTAGCAGGCGTGGTTGCCGGAATTGTTCTTATTGGCCTTGCCTTGCTGCTGATTTGGAAACTTTTAATGATAATTCATGACAGAAGGGAATTTGCTAAATTTGAAAAGGAGAAAATGAATGCCAAGTGGGACACG
Seq C2 exon
GGTGAAAATCCTATTTACAAGAGTGCCGTGACAACTGTGGTCAATCCGAAGTATGAGGGAAAATGAATCTTACTCAGGCGGAGTTTGCAACACCAAGCTCACAGCAGCAGCATCTTAGTCACAGTAGGGTAGCTTTGGGGCTCTGTGGCCAGGGGTTTATTCACATGCAGGTTTGGAAAATGTACAATATGTATAATTTTTAATTTTTTATTATTTTGAAAATAATGTTATAATCCATGCCAGGGACTGACAGAAGACTTGAGAAAGGATCTTTAATCCTTATCAGCTGAGGTCACAGCGTGCCTTTTTAACCCTTCCTCCCGGACCCTTGGAATCAAGCTCTTACTAGATTGAATGACACTGCTGGTGCTAATGCCGGGCACAGCTGAAGTAGCAGCATCACAGCATCTGAACCATGACTGATTCTCAGCTTTACAGAGTGGCCAGGACTAGTTAAACAGAATCAAAGAACAGTCCTGCTGGTGGCTCTGGGCTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'23-24,'23-21,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=FE(87.6=100)
A:
PF079657=Integrin_B_tail=PD(6.7=10.7),PF087256=Integrin_b_cyt=PU(53.2=44.6)
C2:
PF087256=Integrin_b_cyt=PD(42.6=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCACTGCAAGGAGAAG
R:
CAGAGCCCCAAAGCTACCCTA
Band lengths:
248-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]