MmuEX6040114 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27583547-27585871:+
Coord C1 exon
chr14:27583547-27583703
Coord A exon
chr14:27584083-27584255
Coord C2 exon
chr14:27585719-27585871
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCATTCTTCCTAGGTG
3' ss Score
10.74
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GGATTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTGTCTAAGCAGACCAGGATCACACTGGGGGCTTTGGTTACAATTGATGTCCACGCTAGAGATGTCGTCATGGACATGATTGAAATGG
Seq A exon
GTGTCTCACATGATACAGATTTTCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAATGCTCGAGTTCGTATCATTAATTGCAACGTCAAATATGCTTATGAGTATCTTGGTAACTCACCTCGACTTGTCATAACGCCTTTAACTGACAGATGTTACAGAACATTG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCAGGCACAGGAAAAACGGAAACCACCAAGGACTTGGCTAAAGCGCTGGCTGTACAGTGTGTAGTGTTCAATTGCTCCGACGGGCTAGACTATCTAGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'24-26,'24-24,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTGAGAGGGAAGTTGT
R:
AGATAGTCTAGCCCGTCGGAG
Band lengths:
245-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: