GgaEX0007798 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8681116-8682795:-
Coord C1 exon
chr12:8682639-8682795
Coord A exon
chr12:8682293-8682465
Coord C2 exon
chr12:8681116-8681268
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTAATTATGTGTCTATCAGGTG
3' ss Score
8.41
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GGCTTAAAGGATTATTATGATACACTTCAGCTTCAACTTAATGATATTGTAGAGCTGGTAAGAGGAAAACTGTCAAAGCAAACGAGGACAACACTGGGTGCCTTGGTTACTATTGATGTTCATGCTAGAGATGTCCTCATGGAAATGATTGAAAGTG
Seq A exon
GTGTACAGAGTGAAACAGACTTTCAATGGCTTGCACAACTACGATATTATTGGGAGTTAGAGAACGTTCGTGTCTGCATCATTAATTGCAATGTAAAATATGCTTATGAATACCTTGGAAACTCACCACGCCTGGTCATTACTCCTCTAACAGACAGGTGTTATCGCACCTTG
Seq C2 exon
ATTGGAGCTTTTTATTTAAACCTTGGTGGAGCCCCTGAGGGTCCTGCAGGGACAGGTAAAACAGAGACCACGAAAGATTTAGCTAAAGCTCTTGCTGTGCAGTGTGTTGTCTTCAACTGTTCTGATGGCCTCGATTATGTGGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTAAGAGGAAAACTGTCA
R:
GCCACATAATCGAGGCCATCA
Band lengths:
248-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]