MmuEX6040114 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26770361-26772685:+
Coord C1 exon
chr14:26770361-26770517
Coord A exon
chr14:26770897-26771069
Coord C2 exon
chr14:26772533-26772685
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCATTCTTCCTAGGTG
3' ss Score
10.74
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GGATTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTGTCTAAGCAGACCAGGATCACACTGGGGGCTTTGGTTACAATTGATGTCCACGCTAGAGATGTCGTCATGGACATGATTGAAATGG
Seq A exon
GTGTCTCACATGATACAGATTTTCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAATGCTCGAGTTCGTATCATTAATTGCAACGTCAAATATGCTTATGAGTATCTTGGTAACTCACCTCGACTTGTCATAACGCCTTTAACTGACAGATGTTACAGAACATTG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCAGGCACAGGAAAAACGGAAACCACCAAGGACTTGGCTAAAGCGCTGGCTGTACAGTGTGTAGTGTTCAATTGCTCCGACGGGCTAGACTATCTAGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'24-29,'24-27,27-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
ENSMUST00000022433fB8895
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTGAGAGGGAAGTTGT
R:
AGATAGTCTAGCCCGTCGGAG
Band lengths:
245-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types