DreEX6079818 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19618169-19618973:-
Coord C1 exon
chr23:19618817-19618973
Coord A exon
chr23:19618478-19618650
Coord C2 exon
chr23:19618169-19618321
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACTTTTAATGTCCTTTTCAGGAG
3' ss Score
10.17
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GGTCTTAAGAAATACTATGAGCAGTTGCAGAATCAGCTGAATGATATTGTGGAGCTGGTCAGGGGGAAGCTGCCCAAGCAGACGCGCACCACTCTGGGAGCCCTGGTGACCATTGATGTGCATGCCAGAGATGTGATCCTGGAGTTGATTGAAAAAG
Seq A exon
GAGTTTCTAGTGAGACAGATTTCCAGTGGCTTGCACAGCTACGTTACTATTGGGCGAATGACAATGTCCGTGTCCGCATTATAAACTGCGATGTCAAGTATGCTTATGAGTACCTTGGAAACTCCCCTCGCCTGGTCATCACGCCGCTAACAGACAGATGCTACCGAACTCTG
Seq C2 exon
ATTGGAGCATTTTACTTAAACTTGGGTGGAGCTCCTGAGGGGCCTGCAGGCACAGGCAAAACCGAGACCACCAAAGATCTGGCCAAAGCCCTTGCAGTGCAGTGTGTGGTGTTTAACTGCTCAGATGGTCTTGATTACCTGGCCATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGCAGAATCAGCTGA
R:
AAACACCACACACTGCACTGC
Band lengths:
252-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]