RnoEX6054501 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2435049-2437159:+
Coord C1 exon
chr16:2435049-2435205
Coord A exon
chr16:2435574-2435746
Coord C2 exon
chr16:2437007-2437159
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTATTGCATTCTTTCTAGGTG
3' ss Score
10.87
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GGGTTAAAGAAGTACTACAAGGAACTCCAGTATCAACTAAATGACATTGTGGAGCTGGTGAGAGGGAAGTTATCTAAGCAGACCAGGATCACTCTGGGGGCTTTGGTTACGATTGATGTCCACGCTAGAGATGTTGTCATGGACATGATTGATATGG
Seq A exon
GTGTCTCACATGATACAGATTTCCAGTGGCTCGCTCAACTTCGTTATTACTGGGAATATGAGAACGCTCGAGTTCGTATTGTCAACTGCAATGTCAAATACGCTTATGAGTATCTTGGTAACTCACCACGACTTGTCATAACTCCTTTAACTGACAGATGTTACAGAACATTG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCGGGCACAGGAAAAACGGAGACCACCAAGGACCTGGCGAAAGCCCTTGCTGTGCAGTGTGTCGTGTTCAACTGCTCCGACGGGCTGGACTATCTAGCGATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGTGAGAGGGAAGTT
R:
ATCGCTAGATAGTCCAGCCCG
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]