BtaEX6094451 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MKJ3]
Coordinates
chr22:44255521-44260338:+
Coord C1 exon
chr22:44255521-44255677
Coord A exon
chr22:44255913-44256085
Coord C2 exon
chr22:44260186-44260338
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTATTCCTTCCAGGTG
3' ss Score
11.68
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGATTAAAGAAGTACTATAAGGAACTTCAGAATCAACTAAATGATATTGTGGAGCTGGTAAGAGGAAAACTATCAAAGCAGACCAGGATTACTCTGGGGGCTTTGGTTACTATCGATGTCCATGCTAGAGATGTGGTCATGGACATGATTGATATGG
Seq A exon
GTGTCTCACATGATACAGATTTCCAGTGGCTTGCTCAGCTTCGTTATTATTGGGAATATGACAACGCTCGAGTTCGTATCATTAATTGCAATGTAAAATATGCTTATGAATATCTTGGTAACTCACCTCGACTTGTCATTACTCCTCTAACTGACAGATGTTACAGAACATTG
Seq C2 exon
ATAGGTGCCTTCTATTTAAACCTTGGAGGTGCTCCAGAAGGGCCAGCAGGCACAGGAAAAACGGAAACCACCAAAGACTTGGCTAAAGCTCTTGCTGTACAGTGCGTGGTGTTCAACTGTTCAGATGGGCTCGATTATCTAGCAATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020802-'19-18,'19-16,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(10.4=41.4)
C2:
PF127742=AAA_6=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGCTGGTAAGAGGAAA
R:
CGAGCCCATCTGAACAGTTGA
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]