MmuEX6041790 @ mm9
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57568347-57575131:+
Coord C1 exon
chr14:57568347-57568515
Coord A exon
chr14:57569014-57569165
Coord C2 exon
chr14:57575017-57575131
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTATTTCTTTTTAGCTA
3' ss Score
9.6
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGAACCAAGAGGAAGGCTGTATCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAGTATACATACGGTGTAAATGCGTGGAAACATTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGAGCTAAAATCCT
Seq A exon
CTAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACCACAGCTGAGCTTAACTATGGGTTAGCCCATTTTGTCAATGAGATCAGACGACCAAATGGAGAGAATTATGCACCTGACAGCATCTATTATCTATGCCTTGGTATACAGGAG
Seq C2 exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAGGATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'27-27,'27-25,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTATCAGGATACCAGTCT
R:
CTTGGTTGCCAACTTCGGAGT
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: