GgaEX0025505 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183335251-183340012:-
Coord C1 exon
chr1:183339844-183340012
Coord A exon
chr1:183338765-183338916
Coord C2 exon
chr1:183335251-183335365
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCTTTATTTTACAGCAA
3' ss Score
10.51
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GGAGTGAAGAGGAGAGCAGTGTCAGAGTACCAATCACACGATGATAGCTCTGAAAACTCAGAATGTAGTTTTCCATTCAAATACACATATGGTGTGAATGCATGGAAGCACTGGGTAAAGTCTCGGCATTTAGACGAAGAGCTTCCAGAGTTAGAGGAACTGAAATCAA
Seq A exon
CAAAGTCTGTGAAATTAAAGGAAGATCTATTATCACATACTTCAGCTGAGTTAAACTATGGGTTGGCCCATTTTGTCAATGAAATTCGAAGGCCTAATGGAGAGAACTATGCACCTGACAGCATCTATTATCTGTGTCTTGGGATTCAGGAG
Seq C2 exon
TATTTGTATGGAAGTAACCGAAAAGACAACATCTTTATTGATCCAATCTACCAGACGTTTGAACAAGAATTAAATAAAATCCTTAGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'28-38,'28-37,29-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTCAGAGTACCAATCACA
R:
GCTTGGTTGCCAACTTCTAAGG
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]