DreEX6036002 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21623408-21625943:-
Coord C1 exon
chr9:21625763-21625943
Coord A exon
chr9:21625310-21625455
Coord C2 exon
chr9:21623408-21623522
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCCTCTCACTTCAGCAG
3' ss Score
7.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCCAGAAGAGGCGGGCAGTAGAGGAAGAGTCTTCATCCTCGTTGTCTTCTTCTCCAGCAGCAGAGTCCTCAGCAGTTGACAGCTCTTTCCCCTTAAGCTCCAGATATGGCTTAAACGCATGGAGAAGATGGGCCACAACTGAAGACTCACCGTCCAAAGGAAAGGAGAGCCAGAAACAAG
Seq A exon
CAGTTAGTTTAAAAAGCAGTCTCCTGTCCCTGAGCCAAGAAGAGTTGAATCAGTCTTTATCCCGGTTTGTCAAAGAAGTACGTCGTCCCAATGGTGAACACTACAGTCCAGACAGCCTCCTTTACCTCTGTCTGGGTATCCAGAAG
Seq C2 exon
CATTTGCAGGACAAAGGAAGGACAGATGACCTCTTTAATGACTCACAGTATGAAATGTTTGGGGAGGAACTGAACAAGCTCCTCAAAGACTGGCAACCCAGTGTTCTTCCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'28-26,'28-23,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=0.184 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAGTAGAGGAAGAGTCT
R:
AGCTTGTTCAGTTCCTCCCCA
Band lengths:
249-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]