HsaEX6039446 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20640991-20656270:+
Coord C1 exon
chr13:20640991-20641159
Coord A exon
chr13:20641379-20641530
Coord C2 exon
chr13:20656156-20656270
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTATGTATTTTTAGCTA
3' ss Score
7.36
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GGAGCCAAGAGAAAGGCTGTATCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAATATACGTATGGCGTAAATGCATGGAAACACTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGAGTTAAAATCTT
Seq A exon
CTAAATCAGTAAAGTTAAAAGAGGATCTACTCTCTCACACCACAGCTGAGCTTAACTATGGGTTAGCTCATTTTGTCAATGAGATCCGACGGCCAAATGGAGAGAATTATGCACCTGACAGCATCTATTACCTTTGCCTTGGAATACAGGAG
Seq C2 exon
TATTTGTGTGGAAGTAATCGAAAAGACAACATATTTATTGATCCTGGATACCAAACATTTGAGCAAGAATTGAATAAAATACTGCGAAGCTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'34-40,'34-35,35-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTATCAGGATACCAGTCT
R:
GGTTGCCAGCTTCGCAGTATT
Band lengths:
254-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)