RnoEX6051917 @ rn6
Exon Skipping
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37217252-37223687:+
Coord C1 exon
chr15:37217252-37217420
Coord A exon
chr15:37217934-37218085
Coord C2 exon
chr15:37223573-37223687
Length
152 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTATTTCTTTTTAGCCA
3' ss Score
7.13
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGAACCAAGAGGAAAGCTGTATCAGGATATCAATCTCACGACGACAGTTCTGACAATTCAGAGTGCAGCTTTCCTTTCAAGTATACGTATGGTGTAAATGCATGGAAACACTGGGTCAAAACGAGGCAGCTTGATGAAGATCTTCTGGAATTAGATGAGCTAAAGTCCT
Seq A exon
CCAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACTACAGCTGAGCTCAACTATGGCTTAGCCCATTTTGTCAATGAGATCCGACGACCAAATGGAGAGAATTATGCCCCTGACAGCATCTATTATCTCTGCCTTGGAATACAGGAG
Seq C2 exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAGGATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-'36-42,'36-35,37-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGACGACAGTTCTGACA
R:
TGGAAGTATGCTTGGTTGCCA
Band lengths:
246-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]