MmuEX6041790 @ mm10
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56949510-56956294:+
Coord C1 exon
chr14:56949510-56949678
Coord A exon
chr14:56950177-56950328
Coord C2 exon
chr14:56956180-56956294
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTATTTCTTTTTAGCTA
3' ss Score
9.6
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGAACCAAGAGGAAGGCTGTATCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAGTATACATACGGTGTAAATGCGTGGAAACATTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGAGCTAAAATCCT
Seq A exon
CTAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACCACAGCTGAGCTTAACTATGGGTTAGCCCATTTTGTCAATGAGATCAGACGACCAAATGGAGAGAATTATGCACCTGACAGCATCTATTATCTATGCCTTGGTATACAGGAG
Seq C2 exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAGGATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'40-34,'40-32,42-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTATCAGGATACCAGTCT
R:
CTTGGTTGCCAACTTCGGAGT
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types