MmuEX6049693 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79472603-79473925:+
Coord C1 exon
chr10:79472603-79472780
Coord A exon
chr10:79472896-79473011
Coord C2 exon
chr10:79473781-79473925
Length
116 bp
Sequences
Splice sites
3' ss Seq
GACTTCTGTCTTGGATACAGTGT
3' ss Score
4.71
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GATAGCCTCCTCTGTGGATGTCCTTGTCTCCATCTGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGCTTTACCCTGGTCCTCATAGAGGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGTCAGCGGCCTGCCCCAAACCCTCTATTGGCTTGGCAACTTCCTCTGGGACATG
Seq A exon
TGTAACTACTTGGTGGCAGTGTGCATAGTGGTGTTCATCTTCCTAGCCTTTCAGCAGAGAGCCTATGTGGCCCCAGAGAACCTGCCTGCTCTCTTACTCTTGCTTCTGCTGTATGG
Seq C2 exon
GTGGTCTATCACACCACTCATGTACCCAGCCTCCTTCTTCTTCTCAGTGCCCAGCACGGCCTATGTGGTGCTCACCTGCATCAACCTCTTCATTGGCATCAATAGCAGCATGGCCACCTTCGTGCTAGAACTGCTTTCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'36-41,'36-40,38-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.5=100)
A:
PF126982=ABC2_membrane_3=FE(11.2=100)
C2:
PF126982=ABC2_membrane_3=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCATGTCATTTGTCCCAG
R:
GAAGGTGGCCATGCTGCTATT
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: