DreEX6090517 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5696436-5697100:+
Coord C1 exon
chr11:5696436-5696613
Coord A exon
chr11:5696701-5696816
Coord C2 exon
chr11:5696956-5697100
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTTATTGCATTTCAGGTA
3' ss Score
10.1
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GATGACCACCTCTGTGGATGTTCTGGTGTCCATATGTGTTATTTTTGCCATGTCCTTTGTTCCTGCTAGTTTTGTCCTGTTCCTTATTGAGGAACGGGTCAGTAAATCAAAACACCTGCAGTTTGTCAGTGGAGTGAAACCCATCCTGTACTGGACCACCAACTACGTATGGGACATG
Seq A exon
GTAAACTATACAGTACCGGCCACTATGGTGGTCTTCATCTTTATCAGCTTCCAGCAAGAATCATATGTATCTGAGAAGAATCTGCCTGCACTGGTGCTTCTACTGTTGCTGTATGG
Seq C2 exon
TTGGTCTATCACTCCGCTTATGTACCCAGCGTCCTTCATCTTCTCCGTGCCCAGTACTGCCTATGTGGTGCTCACCTCCATCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACATTTGTCCTGGAGCTCTTTGTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'35-37,'35-35,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.8=100)
A:
PF126982=ABC2_membrane_3=FE(10.2=100)
C2:
PF126982=ABC2_membrane_3=FE(12.9=100)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGATGTTCTGGTGTCCA
R:
AGAGGTTGATGGAGGTGAGCA
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]