GgaEX6050613 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53608317-53609363:-
Coord C1 exon
chrZ:53609227-53609363
Coord A exon
chrZ:53608549-53608664
Coord C2 exon
chrZ:53608317-53608461
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTCACCTTCCAGTGC
3' ss Score
8.88
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTTGCCATGTCCTTTGTTCCTGCCAGCTTTTGTGGTGTTCCTTATCCAGGAACGTGTCAGTAAGGTTAAGCACTTGCAGTTCATCAGTGGTGTGAAGCCTGTAATCTACTGGCTGGCCAACTTTGTCTGGGATATG
Seq A exon
TGCAACTACATCGTTCCAGCCACACTCGTCATCATCATCTTCATCTGCTTCCAACAGAAGTCCTATGTATCCTCCTCCAACTTGCCTGTGCTCGCTCTTCTTCTGCTTCTCTATGG
Seq C2 exon
TTGGTCTATCACTCCTCTCATGTATCCAGCCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'47-61,'47-60,48-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.8=100)
A:
PF126982=ABC2_membrane_3=FE(10.0=100)
C2:
PF126982=ABC2_membrane_3=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTGTTCCTGCCAGCTT
R:
TCCAGGACAAAGGTGGCTACA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]