BtaEX6035698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96286709-96289248:-
Coord C1 exon
chr8:96289071-96289248
Coord A exon
chr8:96286940-96287055
Coord C2 exon
chr8:96286709-96286853
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGTTTCACTTTTAGTGC
3' ss Score
10.76
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGACCACATCCGTGGACGTCCTCGTGTCCATCTGTGTCATCTTCGCGATGTCCTTTGTCCCGGCCAGCTTTGTCGTGTTCCTGATCCAGGAGCGCGTCAGCAAAGCGAAGCACCTGCAGTTCATCAGTGGAGTGAAGCCTGTCATCTACTGGCTCTCCAATTTTGTCTGGGACATG
Seq A exon
TGCAACTACGTGGTTCCTGCCACGCTGGTCATTATCATCTTCATCTGCTTCCAGCAGAAGTCCTATGTGTCCTCCACCAACCTGCCTGTGCTCGCTCTTCTACTTTTGCTGTATGG
Seq C2 exon
GTGGTCCATCACACCTCTCATGTACCCAGCCTCCTTCGTGTTCAAGATCCCCAGCACAGCCTACGTGGTCCTCACCAGCGTGAACCTCTTCATCGGCATCAATGGCAGTGTGGCCACGTTTGTACTGGAGCTCTTCACCAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'45-47,'45-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.2=100)
A:
PF126982=ABC2_membrane_3=FE(7.2=100)
C2:
PF126982=ABC2_membrane_3=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGTCCATCTGTGTCA
R:
ATGCCGATGAAGAGGTTCACG
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]