RnoEX6021853 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69873053-69876412:-
Coord C1 exon
chr5:69876235-69876412
Coord A exon
chr5:69873307-69873422
Coord C2 exon
chr5:69873053-69873197
Length
116 bp
Sequences
Splice sites
3' ss Seq
AACTTTATTTTCTCTTTCAGTGT
3' ss Score
10.98
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGACCACATCTGTCGACGTCCTTGTGTCCATCTGTGTCATCTTTGCAATGTCCTTTGTGCCAGCCAGCTTTGTTGTGTTCCTGATCCAGGAGCGTGTGAGCAAAGCCAAACACCTTCAGTTCATCTGCGGCGTGAAGCCTGTCATCTACTGGCTCTCCAACTTTGTCTGGGATATG
Seq A exon
TGTAATTATGTGGTCCCTGCTACACTGGTCGTTATCATCTTCATCTGCTTCCAGCAGAAGTCCTATGTATCCTCCACCAACCTGCCTGTTCTAGCCCTTCTGCTCTTGCTATATGG
Seq C2 exon
GTGGTCGATCACTCCTCTCATGTACCCAGCGTCCTTTGTGTTCAAGATCCCCAGCACTGCCTACGTGGTCCTCACCAGTGTGAACCTCTTCATCGGCATCAATGGTAGTGTGGCCACTTTCGTCCTGGAGCTCTTTACAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'50-50,'50-49,52-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.2=100)
A:
PF126982=ABC2_membrane_3=FE(7.2=100)
C2:
PF126982=ABC2_membrane_3=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCTTTGTGCCAGCCAG
R:
TGGCCACACTACCATTGATGC
Band lengths:
246-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]