DreEX0009896 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6187259-6193819:+
Coord C1 exon
chr14:6187259-6187436
Coord A exon
chr14:6187519-6187634
Coord C2 exon
chr14:6193675-6193819
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTTCTGCTACAGTGC
3' ss Score
9.97
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GATGACTACCTCGGTAGACGTGCTGGTTTCCATCTGCGTGATCTTCGCCATGTCTTTCGTCCCTGCTAGCTTTGTTGTCTTCCTCATCCAAGAGCGAGTGAACAAAGCCAAGCACATGCAGTTTATCAGTGGAGTTCAGCCATATCTCTACTGGCTGGCAAACTTTCTCTGGGATATG
Seq A exon
TGCAATTATGTTGTTCCTGCCACTCTGGTGATCCTGATCTTTGTGTGCTTTCAACAAAAAGCCTACGTTTCCGCCACCAACCTGCCTGTTCTTGCCCTGCTTCTGCTTCTATATGG
Seq C2 exon
ATGGTCCATCACTCCTCTTATGTACCCAGCATCCTTCCTCTTTAAAATCCCCAGCACTGCTTATGTGGTTCTCACAAGCGTCAACATCCTCATTGGGATCAATGGCAGCATTTCAACATTTGTCATGGAGTTATTCGGAAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'41-45,'41-44,42-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.2=100)
A:
PF126982=ABC2_membrane_3=FE(11.7=100)
C2:
PF126982=ABC2_membrane_3=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGTAGACGTGCTGGTTTC
R:
TGTTGACGCTTGTGAGAACCA
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]