GgaEX6050613 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54556621-54557708:-
Coord C1 exon
chrZ:54557531-54557708
Coord A exon
chrZ:54556853-54556968
Coord C2 exon
chrZ:54556621-54556765
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTTCACCTTCCAGTGC
3' ss Score
8.88
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GATGACCACATCAGTGGATGTCCTGGTCTCCATCTGTGTGATCTTTGCCATGTCCTTTGTTCCTGCCAGCTTTGTGGTGTTCCTTATCCAGGAACGTGTCAGTAAGGCTAAGCACTTGCAGTTCATCAGTGGTGTGAAGCCTGTGATCTACTGGCTGGCCAACTTTGTCTGGGATATG
Seq A exon
TGCAACTACATCGTTCCAGCCACACTCGTCATCATCATCTTCATCTGCTTCCAACAGAAGTCCTATGTATCCTCCTCCAACTTGCCTGTGCTCGCTCTTCTTCTGCTTCTCTATGG
Seq C2 exon
TTGGTCTATCACTCCTCTCATGTATCCAGCCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'51-68,'51-67,52-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.1=100)
A:
PF126982=ABC2_membrane_3=FE(10.4=100)
C2:
PF126982=ABC2_membrane_3=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGATGTCCTGGTCTCC
R:
GGTTCACACTGGTCAGCACAA
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]