DreEX0009878 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51979356-51980302:+
Coord C1 exon
chr1:51979356-51979533
Coord A exon
chr1:51979615-51979730
Coord C2 exon
chr1:51980158-51980302
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTGCATTTTGGGTCTTTTAGTGC
3' ss Score
6.54
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AATGACCACCTCGGTGGATGTGCTGGTGTCCATCTGCGTCATCTTCGCCATGTCCTTCGTTCCAGCCAGTTTCGTGGTGTTCCTCATCCAGGAGAGAGTGAATAAAGCCAAACACATGCAGTTCATCAGCGGAGTGCAGCCGTTTCTCTACTGGCTGGCCAACTTTGTCTGGGACATG
Seq A exon
TGCAACTACATTGTCCCGGCGACTCTGGTGATCATCATCTTCGTCTGTTTCCAACAAGAGGCATATGTGTCTTCGACAAACCTGCCGGTTCTTGCTCTTCTGCTGCTTCTGTATGG
Seq C2 exon
ATGGTCCATAACGCCCCTGATGTACCCAGCTTCATTCTTCTTCAAGATCCCAAGTACAGCATATGTGGTTCTGACCAGCGTCAACATCCTCATTGGGATAAACGGCAGCGTATCCACATTCGTCCTGGAGCTTTTCGGCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'39-40,'39-39,40-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(16.4=100)
A:
PF126982=ABC2_membrane_3=FE(10.6=100)
C2:
PF126982=ABC2_membrane_3=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTTCCAGCCAGTTTCGT
R:
AGCTCCAGGACGAATGTGGAT
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]