BtaEX0001720 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45176460-45177401:+
Coord C1 exon
chr7:45176460-45176637
Coord A exon
chr7:45176872-45176987
Coord C2 exon
chr7:45177257-45177401
Length
116 bp
Sequences
Splice sites
3' ss Seq
AACCACCATCTCCAATGCAGTGT
3' ss Score
4.58
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATGGCCTCCTCGGTGGACGTGCTTGTCTCCATCTGCGTGGTCTTCGCCATGTCCTTTGTCCCGGCCAGCTTCATCCTTGTCCTCATTGACGAGCGTGTCACCCGAGCCAAACACCTGCAGTGCATGGGGGGCCTGCCCCCCACTCTCTACTGGCTTGGCAACTTTCTCTGGGACATG
Seq A exon
TGTAACTACTTGGTGTCAGCCTGCATCGTGGTGCTCATCTTTTTGGCCTTCCAGCAGAGGGCGTATGTGGCCCCTGCCAACCTGCCTGCCCTCCTGCTGTTGCTACTACTGTATGG
Seq C2 exon
CTGGTCGATCACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACAGCCTATGTTGTGCTCACCTGCATCAATCTCTTCATTGGTATCAATGGCAGCATGGCCACCTTCGTGCTTGAGCTCTTCTCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(18.6=100)
A:
PF126982=ABC2_membrane_3=FE(11.9=100)
C2:
PF126982=ABC2_membrane_3=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTGCTTGTCTCCATCTG
R:
TGCAGGTGAGCACAACATAGG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development