MmuEX6049707 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80002507-80003333:+
Coord C1 exon
chr10:80002507-80002729
Coord A exon
chr10:80002835-80003052
Coord C2 exon
chr10:80003132-80003333
Length
218 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTTTTCCCAGCTAGGGA
3' ss Score
4.75
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTTCCTGCGGGTGCTGAGCCGGTCTCTGCCTCTGTTTCTGACTCTGGCCTGGATTTATTCGGTGGCGCTCACTGTGAAGGCCGTGGTGCGTGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGCTGAGCCGCGCGGTGCTCTGGCTTGGTTGGTTCCTCAGCTGCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGGTATTAGTGCTTAAG
Seq A exon
GGAACATCCTTCCTTACAGCCACCCGGTTGTAATCTTCCTTTTCTTGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCAGGGCCAACCTGGCAGCAGCCTGCGGGGGGCTCGCCTATTTTGCGCTCTATCTGCCCTACGTACTGTGTGTGGCCTGGCGCGAGCGCCTGCACCTGGGCGGACTCTTAGCTGCG
Seq C2 exon
AGCCTGCTGTCCCCTGTAGCCTTTGGCTTTGGATGCGAAAGCCTGGCGCTACTAGAGGAGCAGGGAGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGGACGTCTTCAGCCTGGCCCAGGTGTCTGCCTTCCTGTTGCTTGATGCCGTCATCTACGGCCTTGCCCTCTGGTACCTAGAGGCTGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'28-29,'28-28,29-29
Average complexity
S*
Mappability confidence:
88%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(31.8=100)
A:
PF126982=ABC2_membrane_3=FE(31.3=100)
C2:
PF126982=ABC2_membrane_3=PD(25.8=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGTGAGAAAGAGACA
R:
CAAGCAACAGGAAGGCAGACA
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types