MmuEX6049707 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79465252-79466078:+
Coord C1 exon
chr10:79465252-79465474
Coord A exon
chr10:79465576-79465797
Coord C2 exon
chr10:79465877-79466078
Length
222 bp
Sequences
Splice sites
3' ss Seq
AACTCTTGTGTTTTTCCCAGCTA
3' ss Score
7.18
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTTCCTGCGGGTGCTGAGCCGGTCTCTGCCTCTGTTTCTGACTCTGGCCTGGATTTATTCGGTGGCGCTCACTGTGAAGGCCGTGGTGCGTGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGCTGAGCCGCGCGGTGCTCTGGCTTGGTTGGTTCCTCAGCTGCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGGTATTAGTGCTTAAG
Seq A exon
CTAGGGAACATCCTTCCTTACAGCCACCCGGTTGTAATCTTCCTTTTCTTGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCAGGGCCAACCTGGCAGCAGCCTGCGGGGGGCTCGCCTATTTTGCGCTCTATCTGCCCTACGTACTGTGTGTGGCCTGGCGCGAGCGCCTGCACCTGGGCGGACTCTTAGCTGCG
Seq C2 exon
AGCCTGCTGTCCCCTGTAGCCTTTGGCTTTGGATGCGAAAGCCTGGCGCTACTAGAGGAGCAGGGAGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGGACGTCTTCAGCCTGGCCCAGGTGTCTGCCTTCCTGTTGCTTGATGCCGTCATCTACGGCCTTGCCCTCTGGTACCTAGAGGCTGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(31.8=100)
A:
PF126982=ABC2_membrane_3=FE(31.3=100)
C2:
PF126982=ABC2_membrane_3=PD(25.8=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGTGAGAAAGAGACA
R:
CAAGCAACAGGAAGGCAGACA
Band lengths:
292-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: