BtaEX0001716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45169624-45170500:+
Coord C1 exon
chr7:45169624-45169846
Coord A exon
chr7:45169982-45170203
Coord C2 exon
chr7:45170299-45170500
Length
222 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTGTCCTCCTGCAGCTC
3' ss Score
9.93
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
GTTCCTGCGCGTGCTGAGCCGGTCACTGCCACTCTTCCTGACACTGGCTTGGATCTACTCTGTGGCGTTGACGGTGAAGGCCGTGGTGCGTGAGAAGGAGACTCGGCTGCGCTACACGATGCGCGCCATGGGGCTCAGCGCCACTGCACTGTGGCTGGGCTGGTTCCTCAGCTGCCTCGGGCCCTTCCTCCTCAGCACCGCGCTGCTTGTGCTGGTACTCAAG
Seq A exon
CTCGGAGACATCCTCCCCTACAGCCACCCGGGGGTGCTGTTCCTGTTCTTGGCGGCTTTCGCTGTGGCCACAGTGGTCCAGAGTTTCTTGCTGAGCGCCTTTTTCTCCCGCGCGAACTTGGCAGCCGCCTGTGGGGGTCTTGCCTACTTCGTACTCTATCTGCCCTACGTGCTGTGCGTGGCCTGGAGGGACCAGCTGCCAATGGGCGGCCGCGTGGCCGCG
Seq C2 exon
AGCCTTCTGTCGCCCGTGGCCTTCGGTTTTGGCTGCGAGAGCCTGGCGCTGCTGGAGGAGCAGGGCGAGGGCGCGCAGTGGCACAACTTGGGCACCGGGCCTACAGCAGATGTCTTCAGCTTGGCCCAGGTCTCTGGCCTTCTGTTGCTCGATGCTGCTCTCTATGGCCTTGCCACTTGGTACCTGGAGGCGGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(33.8=100)
A:
PF126982=ABC2_membrane_3=FE(33.3=100)
C2:
PF126982=ABC2_membrane_3=PD(27.4=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGATCTACTCTGTGGCG
R:
GGGCCAAGCTGAAGACATCTG
Band lengths:
304-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development