DreEX6090535 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5667832-5673640:+
Coord C1 exon
chr11:5667832-5668054
Coord A exon
chr11:5670433-5670654
Coord C2 exon
chr11:5673436-5673640
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCTGTCTCTTGCAGTGG
3' ss Score
11.68
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATTTATCCGTGTGCTGAATCGTTCTCTGCCTCTGTTTATGACACTGGCGTGGATCTATTCTGTGGCCATGATCATCAAGGGTGTTGTCTATGAGAAAGAGGCTCGTCTGAAGGAGACCATGCGCATCATGGGTCTGGGCTCAGGGATGCTGTGGTTCAGCTGGTTCATCAGCAGTTACCTGCCCTTCCTGTTTAGTGCTGCACTCCTTATCGCCGCCCTTAAG
Seq A exon
TGGGGAGATATTTTACCCTACAGTGACCCGGCTGTTGTGTTCTTCTTCCTGGCTGCGTTTGCTACAGCCACCATCATGCTTTGCTTCCTCATCAGCACGTTCTTCTCACGCGCTAACCTGGCAGCAGCGTGCGGAGGACTTATTTACTTCACACTTTACCTGCCGTATGTGCTGTGTGTAGCCTGGAGGGAATATCTGACCAGCACACACAGGATCTTAGCG
Seq C2 exon
AGCTTCCTGTCTCCTGTGGCCTTTGGTTTTGGCTGTGAGTATTTCTCTCAGTATGAAGAGCAGGGTGTGGGGATCCAGTGGTTTAACTTGAAATCCAGCCCCATGGAGGGAGACACCTACAGCTTCAACACCTCCATCATGATGCTGTATGCAGATGCTCTAATCTATGCACTGGCCACTTGGTACATTGAAGCTGTCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(23.2=100)
A:
PF126982=ABC2_membrane_3=FE(22.9=100)
C2:
PF126982=ABC2_membrane_3=PD(19.1=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGATCTATTCTGTGGCC
R:
GCTGTAGGTGTCTCCCTCCAT
Band lengths:
300-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]