BtaEX6035678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96313840-96317636:-
Coord C1 exon
chr8:96317414-96317636
Coord A exon
chr8:96315091-96315312
Coord C2 exon
chr8:96313840-96314044
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTTGGTCTCTTTCTTCCCAGTTA
3' ss Score
8.66
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CTTCCTGCGGGTCATGAGCCGGTCCATGCCTCTCTTCATGACGCTGGCCTGGATCTACTCGGTGGCTGTGATCATCAAGGGCATTGTGTACGAGAAGGAGGCACGGCTGAAAGAGACCATGCGCATCATGGGTCTGGACAACGGTATCCTCTGGTTCAGCTGGTTCATCAGCAGCCTCATCCCTCTGCTCGTGAGCGCCGGCCTACTGGTGGTCATCCTGAAA
Seq A exon
TTAGGAAACCTGCTTCCCTACAGCGACCCCAGCGTGGTGTTTGTCTTTCTGTCTGTGTTCGCCACGGTGACCATCCTGCAGTGCTTCCTGATCAGCACGCTCTTCTCCAGAGCCAACCTGGCGGCCGCCTGTGGGGGCATCATTTACTTCATGCTATACCTGCCCTACGTCCTGTGCGTGGCGTGGCAAGACTACGTGGGCTTTACCCTCAAGATCTTCGTG
Seq C2 exon
AGCCTGATGTCTCCTGTGGCTTTTGGGTTCGGCTGTGAGTACTTCGCCCTTTTCGAGGAGCAGGGCATTGGGGTACAGTGGGACAACCTCTTTGAGAGCCCCACAGAGGAAGATGGCTTCAACCTCACCACCTCCGTCTCCATGATGCTGTTTGACACCTTTCTCTATGGGGTGATGACGTGGTACATTGAGGCTGTGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(29.7=100)
A:
PF126982=ABC2_membrane_3=FE(29.3=100)
C2:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTGTGATCATCAAGGG
R:
GGTGGTGAGGTTGAAGCCATC
Band lengths:
295-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]