GgaEX6050605 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53626707-53629000:-
Coord C1 exon
chrZ:53628773-53629000
Coord A exon
chrZ:53627520-53627736
Coord C2 exon
chrZ:53626707-53626911
Length
217 bp
Sequences
Splice sites
3' ss Seq
NNNNNNNNNNNNNNNNNNNGGAA
3' ss Score
0
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ATTTCTGCGTGTCATGAGCCGTTCCATGCCTCTCTTCATGACTCTAGCCTGGATCTACTCAGTGGCTGTGATAATTAAGGGCATTGTGTATGAGAAGGAAGCCCGGCTAAAGGAAACAATGAGGATTATGGGCCTTGACAATGGCATCCTTTGGCTAAGCTGGTTCATTAGCAGCCTCATCCCTCTCCTCATGAGTGCAGGTCTGCTGGTGCTGATCCTCAAGGTGAG
Seq A exon
GAATCTGCTGCCTTACAGTGACCCTAGTGTGGTGTTCGTTTTCCTCTCAATCTTTGGCATTGTGACCATCCTGCAGTGCTTTCTCATCAGCACCGTGTTCTCCAGGGCCAACCTGGCAGCTGCCTGTGGAGGCATTGTGTATTTCACTCTATACCTACCCTACGTGCTGTGTGTTGCCTGGCAGGACTATGTCAGCTTCTCGCTCAAGATCTTTGCG
Seq C2 exon
AGCCTGTTATCTCCAGTAGCCTTTGGCTTTGGTTGCGAGTACTTTGCACTGTTTGAAGAGCAGGGAGTTGGTGTTCAGTGGGACAACTTCTTTGAGAGCCCACTAGAAGAAGATGGCTTTAGCATCACCACATCTGCTGTAATGATGTTGTTTGACACGTTCCTCTATGGGGTCATGACCTGGTACATTGAGTCTGTCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'23-38,'23-37,24-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(30.5=100)
A:
PF126982=ABC2_membrane_3=FE(28.9=100)
C2:
PF126982=ABC2_membrane_3=PD(24.5=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCGGCTAAAGGAAACA
R:
ACCCCATAGAGGAACGTGTCA
Band lengths:
304-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]